Help




How to use qPhos




Quick Search

1. Quick Search: In the home page of qPhos, users can specify one field or all the fields to perform a quick search with the keyword(s) in the field(s). Users can simply click example and submit buttons to perform an example search.




Browse

2. Browse: In the Browse page, users can click one term to search the specified data in qPhos. The browse page is consisting of three modules including conditions, samples and genes, which are sorted alphabetically. Users can click the initial and select the term of interest.




Search

3. Search: In the Search page, users can add more keyword boxes and choose 'AND', 'OR' or 'NOT' to perform a more accurate multiple keywords search. Users can simply click example and submit buttons to perform an example search.




Result

4. Result:







qKinAct service

5. qKinAct service: +/- means the phosphorylation site is positive/negative related with the kinase activity. auto means the phosphorylation site is an autophosphorylation site of the kinase.




Phosphorylation Resources





UniProt

1. UniProt: The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.

Website: https://www.uniprot.org/




HPRD release 9

2. HPRD release 9: HPRD currently contains information for 16,972 PTMs which belong to various categories with phosphorylation (10,858), dephosphorylation (3,118) and glycosylation (1,860) forming the majority of the annotated PTMs. At least one enzyme responsible for PTMs has been annotated for 8,960 PTMs, which resulted in the documentation of 7,253 enzyme - substrate relationships.

Website: http://www.hprd.org/




dbPTM

3. dbPTM: dbPTM is an informative resource of experimental post-translational modifications (PTMs) obtained from public resources as well as manually curated MS/MS peptides associated with PTMs from research articles for investigating the substrate specificity of PTM sites and functional association of PTMs between substrates and their interacting proteins.

Website: http://dbptm.mbc.nctu.edu.tw/index.php




PhosphoSitePlus

4. PhosphoSitePlus: PhosphoSitePlus is a new version of PhosphoSite, is a web-based database to collect protein modification sites, including protein phosphorylation sites from scientific literature as well as high-throughput discovery programs. Currently, PhosphoSitePlus contains over 120,000 phosphorylation sites.

Website: http://www.phosphosite.org/homeAction.do




SysPTM 2.0

5. SysPTM 2.0: SysPTM provides a systematic and sophisticated platform for proteomic PTM research, equipped not only with a knowledge base of manually curated multi-type modification data, but also with four fully developed, in-depth data mining tools.

Website: http://lifecenter.sgst.cn/SysPTM/




PHOSIDA

6. PHOSIDA: PHOSIDA is a posttranslational modification database, comprises more than 80,000 phosphorylated, N-glycosylated or acetylated sites from nine different species. All sites are obtained from high-resolution mass spectrometric data using the same stringent quality criteria. PHOSIDA is comprised of three main components: the database environment, the prediction platform and the toolkit section.

Website: http://141.61.102.18/phosida/index.aspx




PTMcode 2

7. PTMcode 2: PTMCode is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored.

Website: http://ptmcode.embl.de/index.cgi




iPTMnet

8. iPTMnet: iPTMnet is a bioinformatics resource for integrated understanding of protein post-translational modifications (PTMs) in systems biology context.

Website: https://research.bioinformatics.udel.edu/iptmnet/




Phospho.ELM 9.0

9. Phospho.ELM 9.0: Phospho.ELM contains 8,718 experimentally verified phosphorylated proteins from different species with 3,370 tyrosine, 31,754 serine and 7,449 threonine sites.

Website: http://phospho.elm.eu.org/




PhosphoPep 2.0

10. PhosphoPep 2.0: PhosphoPep contains MS-derived phosphorylation data from 4 different organisms, including D. melanogaster, H. sapiens, C. elegans, and S. cerevisiae.

Website: http://www.phosphopep.org




dbPAF

11. dbPAF: The dbPAF (database of Phospho-sites in Animals and Fungi) is an online data resource specifically designed for protein phosphorylation in seven eukaryotic species, including H. sapiens, M. musculus, R. norvegicus, D. melanogaster, C. elegans, S. pombe and S. cerevisiae.

Website: http://dbpaf.biocuckoo.org




ActiveDriverDB

12. ActiveDriverDB: ActiveDriverDB is a human proteo-genomics database. The database uses information about post-translational modifications (PTMs) in proteins to annotate and interpret genetic variation, disease genes, and cancer driver genes.

Website: https://www.activedriverdb.org/




Summary of datasets


PMID Number of raw peptides Number of unique sites Number of unique proteins
16396503208198117
170819832999878622258
173893951011171123
18691976653946671434
187760481226149
193518602346762514
196516225514387602486
196903321611796498
1969128941002050626
19770167327174123
20049867358345174
20068231133662205924822
200713623180871002136
2036380348168111262812
20572634464627
2063940947821829783
20686112382354229
20927383229223129
21152398480227174
21210654444440309
2140669285048143853506
21437283812362218
215525201356698454
21609022402194124
2163784382901375713
21712546177479372036380
21751366545444
21857030536544601882
21902226412033771386
21936566123668269007224
21949786384538341791
21955146695054622101
21964256316316191
2211575361294113212832
2219922738766209474710
2221069153607174846413
2249635020608114563350
22497526441142104
225098323416531249
2264115926325277
22912867366328301359
229642244019468221
2298518522902104644294
230410486480412323
230716222398324232
2309084268236150383478
23312004105119530676719
23322592480448001245
23403867230230166
235323367584869983030
23684312621762112534
23716303706243165
23793017713611258
23836654683760192012
238749791853430299
23879269616928561541
23882029899387271
2389882138847234975413
23909892668855091626
23911959243122831610
24117733407732621742
24129246357357288
24211406869883312406
24260401258623651576
242757481688824501176
24349301285624551298
244000941363855440
24425749719428841259
2450121940505106243119
24637012662214
246704161313668782338
2470212717801648700
24706070918237791836
2470855013112271
2482585584401759871
2485087156248117483102
24905233343729731439
24919575423291172
2496181182278134303910
24972180209520911207
2498510693016485
2500250658811150394258
25003641909885783151
2505687948616121393718
251175653321938424
25142963743726
2521954734801522677
25223752189140106
25225353515031
252477634855574432029
25278378441424321115
2531161623881841859
25332170736451201694
2534877215061467892
25348954408319245
253672201096455216
254040122078379932929
255996531098379224
25849741173449203115049
2585043558173182395105
25852190545823111082
2586754649513543814
25907765838338131587
26029660301327551141
260431373690864567
2605545215176150743554
26091039519638101784
262613321544132581053
2626506741886169524107
2626751739301164349
2627026514574109054036
263305411031167632042
26387754678678472
26399325393910
264347761741285433064
2643760219427115863106
26462736966913469
26471730975597264161
26503892116182198758
265465566155260582296
2657250239177122464134
26670566328727751507
266998001147471332912
26714015886072232545
26783066942446411943
2678791214698103953441
268307612313432114
268536212983845362362
2705051616737164194987
27080861523143961595
2710777717541754916
2713428331494107283039
2715501249624147804594
27174698394435081344
2725127526686241616607
2725178979222946993
272731563294928751126
272821434523231731241
273077801445999393
27383761287281178
274227101387493943281
274619792994942599
2748619914161233849
275351401217524641026
2754220716461503994
27642862494484262
27696853538517295
2770303115871347778
2773295459523298236040
2779461230112142474207
278347331967761472656
27956182993323
280607192846458142151
2810208120191198575200
28103766650043781634
2812223161551213615219
281656633436581563235
281764432877256252349
281794084635092602963
2818822816395589443253
281922391195285032959
282096191917289633099
2821000322381427849
2827060515813095
28287266270622391174
283310018590928552
28418008852827241394
28464451723955082070
285393271977690803081
286069173516554142334
2863412065628183933614
286440301201617611021
28656000880871656
2867441943090192885179
28731282212721201292
28803361124124102
28816646684624492
288423191555989192953
28961369775449502167
289786451250125041324
290206381028034581878
29052541994233071453
2915475335588219315120
2921415228501185604389
2925513636794122023974
293827832050320230
29435015971447852006
294389851590743428
29460479648427621440
29496907212121201210






Summary of curated literatures


PMID Sample Quantification method Condition Publication Enrichment method Mass Spectrometer
16396503HeLa S315NTNFA/CtrJ Proteome Res. 2006 Jan; 5(1):127-34.IMACLTQ (Thermo Electron)
17081983HeLaSILACEGF 10min/Ctr; EGF 1min/Ctr; EGF 20min/Ctr; EGF 5min/CtrCell. 2006 Nov 3; 127(3):635-48.TiO2LTQ-FT (Thermo Electron, Bremen, Germany)
17389395184A1iTRAQEGF 16min/Ctr; EGF 1min/Ctr; EGF 2min/Ctr; EGF 32min/Ctr; EGF 4min/Ctr; EGF 8min/CtrProc Natl Acad Sci U S A. 2007 Apr 3; 104(14):5860-5.IMAC; PY100; PT66QSTAR XL Pro (Applied Biosystems); QTRAP 4000 (Applied Biosystems)
18691976HeLa S3SILACM/SMol Cell. 2008 Aug 8; 31(3):438-48.TiO2LTQ-Orbitrap (Thermo Fisher Scientific, Bremen, Germany)
18776048HEBCSILACEGFR Del/WT; EGFR L858R/WTProc Natl Acad Sci U S A. 2008 Sep 16; 105(37):14112-7.4G10; RC20QSTAR Pulsar (Applied Biosystems)
19351860HeLaSILACAdhesion+Spreading, 120min/30min; Adhesion+Spreading, 12min/0min; Adhesion+Spreading, 30min/12minCancer Res. 2009 Apr 15; 69(8):3713-20.IMACLTQ-Orbitrap (Thermo Electron)
19651622HeLa; K-562SILACDasatinib 50nM/5nM ; Dasatinib 50nM/Ctr; Dasatinib 5nM/Ctr; EGF 15min, SB202190 20min/Ctr; EGF 15min, U0126 20min/Ctr; EGF 15min/Ctr; SB202190 20min+EGF 15min/Ctr; U0126 20min+EGF 15min/CtrMol Cell Proteomics. 2009 Dec; 8(12):2796-808.TiO2LTQ-Orbitrap (Thermo Electron, Bremen, Germany)
19690332JurkatSILACOKT3 15min/Ctr; OKT3 5min/Ctr; OKT3 60min/CtrSci Signal. 2009 Aug 18; 2(84):ra46.IMAC; PT66; PY100; PY99LTQ (Thermo Finnigan)
19691289HeLa S3SILACNoscapine 15min/Ctr; Noscapine 60min/CtrJ Proteome Res. 2009 Oct; 8(10):4553-63.TiO2Orbitrap (Thermo Electron)
19770167HeLaSILACEGF 10min/Ctr; EGF 30min/Ctr; Pervanadate 10min/CtrMol Cell Proteomics. 2010 Jan; 9(1):84-99.PY99LTQ-Orbitrap (Thermo Electron, Bremen, Germany)
20049867SGC-7901SILACGenistein/CtrProteomics. 2010 Mar; 10(5):976-86.PY100; 4G10LTQ-Orbitrap (Thermo Electron, Bremen, Germany)
20068231HeLa S3SILACCtr/G1; Ctr/G1-S; Ctr/mitosis; Early S/Ctr; G2/Ctr; Late S/CtrSci Signal. 2010 Jan 12; 3(104):ra3.TiO2; IMACLTQ-Orbitrap (Thermo Fisher Scientific)
20071362A-498SILACHB-EGF/Ctr; HB-EGF/LPA; LPA/CtrMol Cell Proteomics. 2010 Jun; 9(6):1047-62.TiO2LTQ-Orbitrap (Thermo Fisher Scientific)
20363803HEK293SILACAng 15min/Ctr; Ang 3min/Ctr; SII Ang 15min/Ctr; SII Ang 3min/CtrMol Cell Proteomics. 2010 Jul; 9(7):1540-53.TiO2LTQ-Orbitrap XL (Thermo Electron, Bremen, Germany)
20572634CL1-0; CL1-5label-freeCL1-5/CL1-0J Proteome Res. 2010 Aug 6; 9(8):4102-12.PT66; 4G10; TiO2LTQ-Orbitrap (Thermo Fisher Scientific)
20639409SCC-9SILACLPA 1.5min/Ctr; LPA 5min/CtrMol Cell Proteomics. 2010 Nov; 9(11):2337-53.TiO2LTQ-Orbitrap (Thermo Fisher Scientific)
20686112HEK293SILACSII/CtrProc Natl Acad Sci U S A. 2010 Aug 24; 107(34):15299-304.IMACLTQ-Orbitrap XL (Thermo Scientific); LTQ-FT (Thermo Scientific)
20927383U266B1SILACBortezomib/CtrPLoS One. 2010 Sep 29; 5(9).TiO2LTQ-Oribitrap XL (Thermo Fisher Scientific, Waltham, MA)
21152398NHDFlabel-free2 cGy/Ctr; 50 cGy/CtrPLoS One. 2010 Nov 30; 5(11):e14152.IMACLTQ-Orbitrap (Waltham, MA)
21210654MCF-7SIDLE2 30min/CtrJ Proteome Res. 2011 Mar 4; 10(3):1088-97.IMACLTQ-Orbitrap XL (Thermo Fisher Scientific, San Jose, CA)
21406692HUES 9SILACNCM 0.5h/Ctr; NCM 1h/Ctr; NCM 24h/Ctr; NCM 6h/Ctr; PMA 0.5h/Ctr; PMA 1h/Ctr; PMA 24h/Ctr; PMA 6h/CtrSci Signal. 2011 Mar 15; 4(164):rs3.TiO2LTQ-FT Ultra (Thermo Scientific); LTQ-Orbitrap (Thermo Scientific); LTQ-Orbitrap XL (Thermo Scientific)
21437283HES-3SIDLFGF-2 15min/Ctr; FGF-2 5min/CtrPLoS One. 2011 Mar 17; 6(3):e17538.PY99LTQ-Orbitrap (Thermo Electron, Bremen, Germany)
21552520K-562; MOLM-14; MV4-11; SEMSILACMLN518/CtrPLoS One. 2011 Apr 28; 6(4):e19169.PY100LTQ-Orbitrap (Thermo-Finnigan)
21609022DLD-1label-freeHGF 10min/Ctr; HGF 60min/CtrJ Proteome Res. 2011 Jul 1; 10(7):3200-11.PY100LTQ-Orbitrap (ThermoFisher, San Jose, CA)
21637843HBEC3-KT; HBEC3-KT; A-549; HBEC3-KT; NCI-H1299; HBEC3-KT; NCI-H322; NCI-H1299; A-549; NCI-H1299; NCI-H322; NCI-H322; A-549label-free3KTR/3KT; A549/3KT; A549/H1299; A549/H322; H1299/3KT; H322/3KT; H322/H1299PLoS One. 2011; 6(5):e20199.IMACWaters Q-Tof PremierTM (Waters Corp., Milford, MA, USA)
21712546HeLaSILACAZD1152 1uM+ZM447439 5uM/Ctr; BI2536 0.1uM entry/Ctr; BI2536 0.1uM mitosis/Ctr; MLN8054 0.25uM/Ctr; MLN8054 1uM/Ctr; MLN8054 5uM/Ctr; Taxol/CtrSci Signal. 2011 Jun 28; 4(179):rs5.TiO2LTQ-Orbitrap (Thermo Electron)
21751366SW480SILACTGFB/CtrProteomics. 2011 Aug; 11(16):3390-401.TiO2QStar Elite (Applied Biosystems, Foster City, CA, USA)
21857030HeLaSILACCtr/BI 4834Mol Cell Proteomics. 2011 Nov; 10(11):M111.008540.IMACLTQ-FT Ultra (Thermo Fisher Scientific); LTQ Orbitrap XL (Thermo Fisher Scientific)
21902226liverSILACHCC/NormalJ Physiol. 2011 Oct 15; 83(20):7755-62.IAMCLTQ-Orbitrap (Thermo, San Jose, CA)
21936566GTL-16; GTL16 R3 ResistantTMTPF-04217903 24h/Ctr; PF-04217903 6h/CtrJ Proteome Res. 2011 Nov 4; 10(11):5084-94.TiO2LTQ-Orbitrap XL (ThermoFisher, San Jose, CA)
21949786CCRF-CEMSILACCXCL12/CtrPLoS One. 2011; 6(9):e24918.IMACLTQ-Orbitrap (Thermofisher Scientific, San Jose, CA)
21955146HeLaSILACEGF/CtrJ Proteome Res. 2011 Dec 2; 10(12):5383-97.SIMAC; TiO2LTQ-Orbitrap XL (Thermo Scientific, Bremen, Germany)
21964256SGC-7901SILACGenistein/CtrJ Proteomics. 2011 Dec 21; 75(2):695-707.TiO2LTQ-Orbitrap (Thermo Electron, Bremen, Germany)
22115753KG-1SILACCtr/Gefitinib; Erlotinib/Ctr; Erlotinib/GefitinibJ Proteomics. 2012 Feb 2; 75(4):1343-56.IMACLTQ-Orbitrap (Thermo Fisher Scientific)
22199227hTERT-RPE1SILACPlk1(as) 3-MB-PP1/Ctr; Plk1(wt) 3-MB-PP1/CtrMol Cell Proteomics. 2012 Apr; 11(4):O111.012351.IMACLTQ-Orbitrap (Thermo Fisher Scientific)
22210691HeLaiTRAQ; mTRAQEGF 10min/Ctr; EGF 24h/CtrMol Cell Proteomics. 2012 Jun; 11(6):M111.014423.IMACLTQ-Orbitrap Velos (Thermo Fisher Scientific)
22496350HEK293SILACNocodazole, PKD1kd/Parental; PKD1kd/ParentalMol Cell Proteomics. 2012 May; 11(5):160-70.TiO2LTQ-Orbitrap XL (Thermo Scientific); LTQ-Orbitrap Elite (Thermo Scientific)
22497526HAECiTRAQAng-(1-7) 20min/Ctr; Ang-(1-7) 3min/Ctr; Ang-(1-7) 5min/CtrJ Proteome Res. 2012 Jun 1; 11(6):3370-81.TiO2; SIMACLTQ-Orbitrap XL (Thermo Fisher, Waltham, MA)
22509832skiniTRAQ10 cGy/3 cGy; 10 cGy/Ctr; 200 cGy/10 cGy; 200 cGy/3 cGy; 200 cGy/Ctr; 3 cGy/CtrExp Dermatol. 2012 May; 21(5):352-7.IMACLTQ-Orbitrap (Thermo Fisher Scientific)
22641159bloodlabel-freeSchizophrenia/CtrJ Proteomics. 2012 Dec 5; 76 Spec No.:43-55.IMACnanoAquity UPLC-ESI-QTOF Premier (Waters Corporation; Milford, MA, USA)
22912867Glioblastoma initiating cellSILACEGF 15min/CtrPLoS One. 2012; 7(8):e43398.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
22964224SK-BR-3SILACLapatinib 10uM 10min/Ctr; Lapatinib 10uM 1min/Ctr; Lapatinib 10uM 5min/Ctr; Lapatinib 10uM 60min/Ctr; Lapatinib 1uM 10min/Ctr; Lapatinib 1uM 1min/Ctr; Lapatinib 1uM 5min/Ctr; Lapatinib 1uM 60min/CtrMol Cell Proteomics. 2012 Dec; 11(12):1741-57.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific, Bremen, Germany)
22985185breast canceriTRAQBreast cancer high risk/Normal; Breast cancer low risk/NormalJ Proteome Res. 2012 Nov 2; 11(11):5311-22.Fe-IMACLTQ-Orbitrap XL (Thermo Fisher Scientific, Bremen, Germany); LTQ-Orbitrap Velos (Thermo Fisher Scientific, Bremen, Germany)
23041048MCF-10Alabel-freeATP 0uM+EGF+LY294002/Ctr; ATP 0uM+EGF+U0126/Ctr; ATP 0uM+EGF/Ctr; ATP 100uM+EGF+LY294002/Ctr; ATP 100uM+EGF+U0126/Ctr; ATP 100uM+EGF/Ctr; ATP 10uM+EGF+LY294002/Ctr; ATP 10uM+EGF+U0126/Ctr; ATP 10uM+EGF/Ctr; ATP 500uM+EGF+LY294002/Ctr; ATP 500uM+EGF+U0126/Ctr; ATP 500uM+EGF/Ctr; ATP 50uM+EGF+LY294002/Ctr; ATP 50uM+EGF+U0126/Ctr; ATP 50uM+EGF/CtrJ Proteomics. 2012 Dec 21; 77:492-503.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific, Hemel Hempstead, UK)
23071622J14SILACAnti-lgG 0min, SLP76+/SLP76-; Anti-lgG 1.5min, SLP76+/SLP76-; Anti-lgG 10min, SLP76+/SLP76-; Anti-lgG 1min, SLP76+/SLP76-; Anti-lgG 2min, SLP76+/SLP76-; Anti-lgG 3min, SLP76+/SLP76-; Anti-lgG 5min, SLP76+/SLP76-; Unstimulated, SLP76+/SLP76-PLoS One. 2012; 7(10):e46725.IMACLTQ-FT (Thermo Fisher Scientific)
23090842SCC-9SILACLPA 10min/Ctr; LPA 30min/Ctr; LPA 3min/Ctr; LPA 90min/CtrProteomics. 2012 Dec; 12(23-24):3485-98.IMACLTQ-Orbitrap (Thermo Fisher Scientific, Bremen, Germany)
23312004HCT 116; SW620; SW480; colorectal cancerSILAC; iTRAQMetastatic/Non-metastatic; SW620/SW480J Proteome Res. 2013 Jun 7; 12(6):2414-21.IMACLTQ-Orbitrap Velos (Thermo Fisher Scientific, Bremen, Germany)
23322592HeLa S3SILACAsynchronous/Thy double arrestProteomics. 2013 Apr; 13(8):1233-46.TiO2LTQ-Orbitrap (Thermo Fisher Scientific)
23403867HUVEC-CSIDL007-AM/CtrMol Biosyst. 2013 Apr 5; 9(4):732-49.Ti4+-IMACLTQ-Orbitrap Velos (Thermo Fisher Scientific)
23532336AML; AML; GMPB; GMPB; Kasumi-1; P31/FUJ; P31/FUJ; Kasumi-1iTRAQAML/GMPB; AZ123 1000nM/Ctr; AZ123 100nM/Ctr; Ku-794 1000nM/Ctr; Ku-794 100nM/Ctr; P31/Fuj/Kasumi-1; PI-103 1000nM/Ctr; Pervanadate/CtrSci Signal. 2013 Mar 26; 6(268):rs6.TiO2unknow
23684312CD4+T cellSILACHIV/Mock vesiclesCell Host Microbe. 2013 May 15; 13(5):613-623.IMACLTQ-Orbitrap (Thermofisher Scientific, San Jose, CA)
23716303GIST-T1iTRAQImatinib 1h/Ctr; Imatinib 24h/Ctr; Imatinib 6h/CtrInt J Cancer. 2013 Dec 1; 133(11):2737-43.PY100LTQ-Orbitrap XL (Thermo Fisher Scientific, Waltham, MA)
23793017DG-75SILACSYK/CtrMol Cell Proteomics. 2013 Oct; 12(10):2969-80.PT66; PY20; PolyMAC-TiLTQ-Orbitrap Velos (Thermo Fisher)
23836654A-549SILACsh-TBK1/CtrProc Natl Acad Sci U S A. 2013 Jul 23; 110(30):12414-9.IMACLTQ-Orbitrap (Thermo)
23874979Jurkat E6.1SILACU0126 0min/Ctr; U0126 10min/Ctr; U0126 2.5min/Ctr; U0126 5min/CtrPLoS One. 2013 Jul 17; 8(7):e69641.PY100LTQ-Orbitrap Velos (Thermo Fisher Scientific)
23879269U-937SILACTet-free 0d/Ctr; Tet-free 2d/Ctr; Tet-free 3d/Ctr; Tet-free 4d/Ctr; Tet-free 5d/CtrJ Proteome Res. 2013 Oct 4; 12(10):4280-301.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific, San Jose, CA)
23882029Jurkat E6.1SIDLPGE2 1min/Ctr; PGE2 60min CtrMol Cell Proteomics. 2013 Nov; 12(11):3350-9.RRX[pS/pT]LTQ-Orbitrap Velos (Thermo Fisher Scientific)
23898821NCI-H2228SILAC; mTRAQCrizotinib/CtrElife. 2013 Sep 6; 12(9):4089-100.IMACQ-Exactive (Thermo Fisher Scientific)
23909892MCF-7SILACTIMP-1, high/LowJ Proteome Res. 2013 Sep 6; 12(9):4136-51.TiO2/DHBLTQ-Orbitrap Velos (Thermo Electron, Bremen, Germany)
23911959NSCLCSILACNSCLC B/NSCLC AJ Proteomics. 2013 Oct 8; 91:286-96.TiO2LTQ-Orbitrap (control software v 2.5.5, build 4, 06/20/2008)
24117733SH-SY5YSILACLRRK2-IN-1/CtrJ Neurochem. 2014 Feb; 128(4):561-76.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
24129246MCF-7SILACpCMV6-KSR1/pCMV6-vectorBr J Cancer. 2013 Nov 12; 109(10):2675-84.TiO2LTQ-Orbitrap Velos (Thermo Scientific)
24211406HaCaT; SCC-9label-freeSCC-9/HaCaTJ Proteomics. 2014 Jan 16; 96:67-81.TiO2Orbitrap Velos (Thermo Fisher Scientific, Waltham, MA, USA)
24260401placentaSIDLPreeclampsia/CtrPLoS One. 2013 Nov 15; 8(11):e80480.Ti-MPSLTQ-Orbitrap (Thermo Fisher, USA)
24275748MCF-7SILACRapamycin 15min/Ctr; Rapamycin 2min/Ctr; Rapamycin 30min/Ctr; Rapamycin 7min/Ctr; Starvation 15min/Ctr; Starvation 2min/Ctr; Starvation 30min/Ctr; Starvation 7min/CtrAutophagy. 2014 Feb; 10(2):356-71.TiO2LTQ-Orbitrap XL (Thermo Scientific)
24349301NPC; SJNB-10label-freeNB10/NPCPLoS One. 2013 Dec 11; 8(12):e82513.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
24400094venous bloodlabel-freeKODA-PC/PLPC; Thrombin/RestPLoS One. 2014 Jan 6; 9(1):e84488.IMAC; TiO2LTQ-Orbitrap (Thermo Fisher Scientific, Waltham, MA)
24425749MCF-7label-freeRT 120min/Incubator; RT 15min/IncubatorMol Cell Proteomics. 2014 Mar; 13(3):836-48.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific)
24501219BOECSILACThrombin 10min/Ctr; Thrombin 2min/Ctr; Thrombin 30min/Ctr; Thrombin 5min/CtrBlood. 2014 Mar 20; 123(12):e22-36.TiO2LTQ-Orbitrap Elite (Thermo Scientific)
24637012HEK293SILACDOI/Lisuride; DOI/Vehicle; Lisuride/VehicleMol Cell Proteomics. 2014 May; 13(5):1273-85.IMACLTQ-Orbitrap Velos (Thermo Fisher Scientific)
24670416pancreasTMTPancreatic cancer/NormalPLoS One. 2014 Mar 26; 9(3):e90948.IMAC; TiO2LTQ-Orbitrap Velos (Thermo Scientific)
24702127lunglabel-freeHOPE/SFJ Proteome Res. 2014 Nov 7; 13(11):5230-9.IMACLTQ-Orbitrap Velos (Thermo Scientific)
24706070DFCiTRAQSFM 24h/Ctr; SFM 48h/CtrNeurochem Res. 2014 Jul; 39(7):1199-205.TiO2Q-Exactive (Thermo Scientific, Bremen, Germany)
247085506-10BSILACDNP/CtrBMC Cancer. 2014 Apr 5; 14:243.TiO2LTQ-Orbitrap (Thermo Electron, Bremen, Germany)
24825855SW1736label-freeAZD6244 15min/Ctr; AZD6244 30min/Ctr; PLX4032 15min/Ctr; PLX4032 30min/CtrMol Cancer Ther. 2014 Jul; 13(7):1894-906.TiO2TripleTOF 5600 (AB Sciex)
24850871Jurkatlabel-freePGE2 10min/Ctr; PGE2 20min/Ctr; PGE2 30min/Ctr; PGE2 5min/Ctr; PGE2 60min/CtrMol Cell Proteomics. 2014 Sep; 13(9):2426-34.Ti4+-IMACLTQ-Orbitrap Elite (Thermo Fisher Scientific, Bremen, Germany)
24905233DG-75SILACPiceatannol/CtrAnal Chem. 2014 Jul 1; 86(13):6363-71.PolyMAC-Zr; PolyMAC-TiLTQ-Orbitrap Velos (Thermo Fisher)
24919575PC-9label-freePC9+Erlotinib/Ctr; PC9GR+Erlotinib/Ctr; PC9GR/PC9Clin Cancer Res. 2014 Aug 1; 20(15):4059-4074.PY100LTQ-Orbitrap (Thermo, San Jose, CA)
24961811TIG-3SIDLOIS 3d/Ctr; OIS 3d/OISb 3d; OIS 9d/Ctr; OIS 9d/OISb 9d; OISb 3d/Ctr; OISb 9d/CtrMol Cell Proteomics. 2014 Aug; 13(8):2089-100.PY99; Ti4+-IMACLTQ-Orbitrap Velos (Thermo, San Jose, CA)
24972180liverSIDLHCC/NormalJ Proteome Res. 2014 Aug 1; 13(8):3645-54.PS-DVBLTQ-Orbitrap Velos (Thermo, San Jose, CA)
24985106Skeletal muscleiTRAQCtr/Insulin; Ctr/PMI 5011; Ctr/PMI 5011+Insulin; Insulin, Ctr/PMI 5011; PMI 5011, Ctr/InsulinNutrition. 2014 Jul-Aug; 30(7-8 Suppl):S43-51.TiO2QTRAP 4000(AB SCIEX, Framingham, MA, USA)
25002506A-375; HEK293SILACBI-D1870/DMSO; PD184352/DMSO; PMA, BI-D1870/Ctr; PMA, PD184352/Ctr; PMA, RSK1/2 RNAi/Ctr; RSK1/2 RNAi/CtrProc Natl Acad Sci U S A. 2014 Jul 22; 111(29):E2918-27.TiO2LTQ-Orbitrap Elite
25003641HL-60SILACVE-821/CtrInt J Mol Sci. 2014 Jul 7; 15(7):12007-26.TiO2Q-Exactive (Thermo Scientific, Bremen, Germany)
25056879HaCaTlabel-freeTGFB 10min/Ctr; TGFB 15min/Ctr; TGFB 20min/Ctr; TGFB 5min/CtrSci Signal. 2014 Jul 22; 7(335):rs5.TiO2Q-Exactive (116) (Thermo Fisher Scientific)
25117565myocardiallabel-freeIF/NF; NIF/IF; NIF/NFPLoS One. 2014 Aug 12; 9(8):e104157.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific, Waltham, MA)
25142963Kit225SILACIL-15/Ctr; IL-2/CtrProteomics. 2015 Jan; 15(2-3):520-31.PY100; 4G10; TiO2Q-Exactive (Thermo Fisher Scientific)
25219547LNCaP clone FGCSILACB-ionone 10min/Ctr; B-ionone 2min/CtrBiochim Biophys Acta. 2015 Jun; 1854(6):632-40.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific, Bremen, Germany)
25223752HSFlabel-freePGE2/CtrJ Proteome Res. 2014 Nov 7; 13(11):5262-80.RRX(S*/T*)LTQ-Orbitrap XL
25225353nfHCCiTRAQHCC/NormalMol Cell Proteomics. 2014 Dec; 13(12):3473-83.TiO2LTQ-Orbitrap XL (Thermo Scientific, France)
25247763MCF-10ASILACEx20-KI/Ex20-KI-J124; Ex20-KI/MCF10A; Ex9-KI/Ex9-KI-J124; Ex9-KI/MCF10ANat Commun. 2014 Sep 23; 5:4961.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
25278378HEK293SILACQuinalizarin/CtrBiochim Biophys Acta. 2015 Jun; 1854(6):609-23.TiO2LTQ-Orbitrap XL (Thermo Fisher Scientific)
25311616MCF-7SILACResveratrol/CtrJ Proteome Res. 2014 Dec 5; 13(12):5734-42.IMACLTQ-Orbitrap (Thermo Electron, Waltham, MA)
25332170brainlabel-freeAlzheimer/ControlProteomics. 2015 Jan; 15(2-3):508-519.IMACLTQ-Orbitrap (Thermo Finnigan, San Jose, CA)
25348772Jurkat E6.1label-freeIO+PMA/CtrProteomics. 2015 Jan; 15(1):25-33.TiO2LTQ-Orbitrap Velos (Thermo Scientific, US)
25348954HCC366; NCI-H2286label-freeDasatinib/CtrCancer Res. 2014 Dec 15; 74(24):7217-7228.PY100LTQ-Orbitrap (Thermo)
25367220MCF-10ASILACE545K/MCF10A; H1047R/MCF10AProteomics. 2015 Jan; 15(2-3):318-26.PY100LTQ-Orbitrap Velos (Thermo Scientific)
25404012NCI-H1975; NCI-H3255SILACEGF, Erlotinib/Ctr; EGF/CtrProteomics. 2015 Jan; 15(2-3):340-55.TiO2LTQ-Orbitrap XL (Thermo Scientific)
25599653SW48SILACG12D/SW48; G12V/SW48; G13D/SW48J Proteome Res. 2015 Mar 6; 14(3):1535-46.TiO2LTQ-Orbitrap XL (Thermo Fisher)
25849741MCF-7SILACIKKB(K44M), TNFA/Ctr; IKKB(WT), TNFA/Ctr; SC-514/Ctr; TNFA+SC-514/Ctr; TNFA, Ctr/SC-514; TNFA, IKKB(K44M)/Ctr; TNFA, IKKB(WT)/Ctr; TNFA/Ctr; TNFA/IKK-B(K44M); TNFA/IKK-B(WT); TNFA/SC-514Nat Commun. 2015 Apr 7; 6:6658.TiO2Q-Exactive (Thermo Scientific); LTQ Velos (Thermo Scientific)
25850435WM239ASILACAZD6244/Ctr; PLX4032/AZD6244; PLX4032/CtrMol Cell Proteomics. 2015 Jun; 14(6):1599-615.TiO2LTQ-Orbitrap Velos
25852190DLD-1SILACTRAIL 5min/Ctr; TRAIL 60min/CtrSci Signal. 2015 Apr 7; 8(371):rs3.IAMCLTQ-Orbitrap (Thermo Fisher Scientific)
25867546MRC-5SILACpUL97/UL97-K355QProteomics. 2015 Jun; 15(12):2006-22.TiO2LTQ-Orbitrap (ThermoFisher Scientific),
25907765HeLa KyotoSILACInsulin+aa, Raptor KD/Ctr; Starve/Insulin+aaMol Cell Proteomics. 2015 Aug; 14(8):2042-55.TiO2LTQ-FT (Thermo Fisher Scientific, Bremen, Germany)
26029660LM-MEL-28label-freePLX4720/CtrFront Oncol. 2015 May 15; 5:95.TiO2Q-Exactive
26043137J.VAv1label-freeIgG 0min, J.Vav1/J.Vav1.WT; IgG 10min, J.Vav1/J.Vav1.WT; IgG 3min, J.Vav1/J.Vav1.WT; IgG 5min, J.Vav1/J.Vav1.WTJ Proteome Res. 2015 Jul 2; 14(7):2963-75.PY100LTQ-Orbitrap Velos (Thermo Fisher Scientific)
26055452HeLaSILACRO3306/CtrMol Cell Proteomics. 2015 Aug; 14(8):2194-212.TiO2LTQ-Orbitrap Velos Pro (Thermo Fisher Scientific)
26091039Hep-G2TMT; label-freeFam20C KD/WT; Fam20C KO/WTCell. 2015 Jun 18; 161(7):1619-32.IMACQ-Exactive (Thermo)
26261332THP-1label-freeMAA-co-IDA/MM-co-IDA 10min; MAA-co-IDA/MM-co-IDA 20min; MAA-co-IDA/MM-co-IDA 30minProc Natl Acad Sci U S A. 2015 Aug 25; 112(34):10673-8.TiO2Orbitrap Velos (Thermo Fisher Scientific)
26265067PaSCTMTA-bungarotoxin/Ctr; Nicotine/CtrJ Proteome Res. 2015 Oct 2; 14(10):4246-56.TiO2Orbitrap Fusion (ThermoFisher Scientific, San Jose, CA)
26267517MCF-10ASILACE545K/MCF10A; H1047R/MCF10AJ Proteome Res. 2015 Sep 4; 14(9):3882-3891.PY1000LTQ-Orbitrap Elite (Thermo Fisher Scientific)
26270265HeLa S3SILACAZD1152/Ctr; VX680/CtrJ Proteome Res. 2015 Sep 4; 14(9):4087-98.TiO2LTQ-Orbitrap (Thermo Scientific)
26330541MCF-7SILACTamoxifen, sensitive/ResistantMol Cell Proteomics. 2015 Nov; 14(11):2887-900.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
26387754Shef4SILACELA Mut/WTCell Stem Cell. 2015 Oct 1; 17(4):435-47.IMACQ-Exactive (Thermo Fisher Scientific)
26399325HeLaSILACMyc-Bub1 WT/KDNat Commun. 2015 Sep 24; 6:8364.AntibodyLTQ-Orbitrap (Thermo Fisher Scientific)
26434776NCI-H929SILACImatinib/Ctr; Velcade/CtrAnal Chem. 2015 Nov 3; 87(21):10995-1006.IMAC; PY1000LTQ-Orbitrap Elite (Thermo Fisher Scientific)
26437602HEK293; muscleTMT; iTRAQ; label-freeAMPK+Compound C/Ctr; AMPK/Ctr; Exercise/CtrCell Metab. 2015 Nov 3; 22(5):922-35.TiO2; SIMACQ-Exactive
26462736HeLaTMTsh PP6c/CtrSci Signal. 2015 Oct 13; 8(398):rs12.TiO2Fusion Orbitrap Tribrid (Thermo Fisher Scientific)
26471730HEK293SILACPINK1 WT/KDEmbo j. 2015 Nov 12; 34(22):2840-61.TiO2LTQ-Orbitrap Velos Pro (Thermo)
26503892CL1-0SIDLCitreoviridin 10min/Ctr; Citreoviridin 10s/Ctr; Citreoviridin 12h/Ctr; Citreoviridin 1h/Ctr; Citreoviridin 1min/Ctr; Citreoviridin 24h/Ctr; Citreoviridin 2h/Ctr; Citreoviridin 36h/Ctr; Citreoviridin 48h/Ctr; Citreoviridin 5min/Ctr; Citreoviridin/CtrMol Cell Proteomics. 2015 Dec; 14(12):3284-98.TiO2LTQ-Orbitrap XL (Thermo Scientific, Berman, Germany)
26546556J.gamma1; Jurkat E6.1TMTAnti-CD3+Anti-CD28 120min/Ctr; Anti-CD3+Anti-CD28 15min/Ctr; Anti-CD3+Anti-CD28 30min/Ctr; Anti-CD3+Anti-CD28 60min/CtrJ Proteomics. 2016 Jan 10; 131:190-198.IMAC; TiO2LTQ-Orbitrap XL
26572502U2OSSILACHU/Ctr; VE-821+HU/Ctr; VE-821+HU/HUProteomics. 2016 Feb; 16(3):402-16.TiO2Q-Exactive Plus (Thermo Scientific)
26670566GB-2SILACCtr/SerumMol Cell Proteomics. 2016 Mar; 15(3):1017-31.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific, Bremen, Germany)
26699800AT34 ABR; NFFSILACH2O2/CtrMol Cell Proteomics. 2016 Mar; 15(3):1032-47.SIMAC; TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
26714015Akata(EBV+)SILACVector/BGLF4PLoS Pathog. 2015 Dec; 11(12):e1005346.TiO2LTQ-Orbitrap Elite
26783066MDA-MB-231TMTGenistein 24h/Ctr; Genistein 3h/CtrInt J Oncol. 2016 Mar; 48(3):1016-28.TiO2LTQ-Orbitrap Velos
26787912liverSILACHCC, Sorafenib/Ctr; Normal, Sorafenib/CtrProc Natl Acad Sci U S A. 2016 Feb 2; 113(5):1381-6.TiO2Orbitrap Elite FT (Thermo Scientific)
26830761ErythrocyteTMTHeparin, Ctr/Erythrocyte; R1, Ctr/Erythrocyte; Uninhibited/ErythrocyteSci Rep. 2016 Feb 2; 6:19766.TiO2LTQ-Orbitrap Velos (Thermo Scientific)
26853621HNSCCTMTCAL27/(OKF6/TERT1); FADU/(OKF6/TERT1); JHU-O11/(OKF6/TERT1); JHU-O22/(OKF6/TERT1); JHU-O28/(OKF6/TERT1); JHU-O29/(OKF6/TERT1)Cancer Biol Ther. 2016; 17(2):219-29.TiO2LTQ-Orbitrap Velos (Thermo Scientific)
27050516HCT 116SILACCortistatin A/CtrCell Rep. 2016 Apr 12; 15(2):436-50.TiO2LTQ-Orbitrap (Thermo Fisher)
27080861Kit225SIDLIL-23 30min/CtrSci Rep. 2016 Apr 15; 6:24491.IMAC; TiO2Q-Exactive (Thermo Scientific, Bremen, Germany)
27107777AMLSILACFresh/FrozenJ Proteomics. 2016 Aug 11; 145:214-25.IMAC; SIMAC; MOACOrbitrap Elite (Thermo Scientific, Waltham, MA, USA)
27134283HeLaSILACFlavopiridol/Ctr; RO-3306/CtrMol Cell Proteomics. 2016 Jul; 15(7):2448-61.TiO2Q-Exactive Plus (ThermoFisher Scientific)
27155012DG-75; DaudiSILACBCR stimulation 10min/Ctr; BCR stimulation 20min/Ctr; BCR stimulation 2min/Ctr; BCR stimulation 5min/Ctr; CD79a KD/Ctr; SYK inhibition/CtrProc Natl Acad Sci U S A. 2016 May 17; 113(20):5688-93.TiO2; PY1000LTQ-Orbitrap Velos (Thermo Scientific); Q-Exactive (Thermo Scientific)
27174698HeLaSIDLCHC siRNA/Luc siRNAMol Cell Proteomics. 2016 Aug; 15(8):2537-53.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
27251275breast canceriTRAQBreast cancer/NormalNature. 2016 Jun 2; 534(7605):55-62.IMACQ-Exactive (Thermo Fisher Scientific)
27251789MelanocytesSILACG12/E; Q61/EJ Invest Dermatol. 2016 Oct; 136(10):2041-2048.TiO2; PY100LTQ-Orbitrap Velos (Thermo Fisher Scientific)
27273156HCT 116label-freeERKi resistant+GDC0973/Ctr; ERKi resistant/Ctr; G824 1uM/Ctr; G824 3uM/Ctr; GDC0973 0.3uM/Ctr; GDC0973 1uM/Ctr; MEKi resistant+G824/Ctr; MEKi resistant/CtrProteomics. 2016 Jul; 16(14):1998-2004.R-R-X-p[S|T]; R-X-X-p[S|T]; Py; P-X-p[S|T]-PLTQ-Orbitrap
27282143SW48; SW48 PIK3CA (E545K/+); SW48 PIK3CA (H1047R/+)label-freeGDC0032/Ctr; GDC0941/Ctr; PI3Ki-A/D/CtrProteomics. 2016 Jul; 16(14):1992-7.R-X-X-p[S|T]; p-[S|T]-Q; [K|R]-X-Ps-X-[K|R]LTQ-Orbitrap Elite
27307780CAL-27SILACCurcumin/CtrClin Proteomics. 2016 Jun 15; 13:13.PY1000Orbitrap Fusion Tribrid (Thermo Electron, Bremen, Germany)
27383761SW620; SW480label-freeSW620/SW480PLoS One. 2016 Jul 6; 11(7):e0158844.TiO2LTQ-Orbitrap (Thermo Scientific)
27422710A-427; A-549SILACSelumetinib/CtrMol Cancer Res. 2016 Oct; 14(10):1019-1029.IMACQ-Exactive plus (Thermo, San Jose, CA)
27461979hSAECiTRAQTGFB+TNFA/Ctr; TGFB/Ctr; TNFA/CtrJ Proteome Res. 2017 Apr 7; 16(4):1632-1645.IMACQ-Exactive (Thermo Scientific, San Jose, CA)
27486199Macrophagelabel-freeInfluenza A virus/CtrMol Cell Proteomics. 2016 Oct; 15(10):3203-3219.IMACQ-Exactive (Thermo Fisher Scientific)
27535140bloodiTRAQScott+(thrombin/convulxin)/Healthy; Scott+ionomycin/Healthy; Scott+thrombin/Healthy; Scott/HealthyJ Physiol. 2016 Oct; 15(10):3154-3169.TiO2Orbitrap Velos (Thermo-Fisher Scientific)
27542207NCI-H358SILACH358-smoke/parentalSci Transl Med. 2016 Sep 20; 7(38):61229-61245.TiO2LTQ-Orbitrap Velos (Thermo Scientific, San Jose, CA)
27642862Jurkatlabel-freePervanadate/CtrNat Chem Biol. 2016 Nov; 12(11):959-966.4G10; PY100; PY99; Ti4+-IMACLTQ-Orbitrap Velos (Thermo)
27696853HT-29SILAC3D/2D cultureJ Proteome Res. 2016 Dec 2; 15(12):4265-4276.IMACQ-Exactive (Thermo Fisher Scientific, Bremen, Germany)
27703031U-251MGlabel-freeJEV P3/CtrSci Signal. 2016 Oct 4; 9(448):ra98.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
27732954NB-1; NB-1643; SH-SY5YSILACCrizotinib/CtrOncotarget. 2016 Nov 15; 7(46):75968-75980.IMACOrbitrap Elite (Thermo Fisher Scientific, Waltham, MA)
27794612A-431TMTGefitinib+FGF2/Ctr; Gefitinib/CtrJ Proteome Res. 2016 Dec 2; 15(12):4490-4504.Fe-IMACQ-Exactive Plus
27834733NHASILACGDC0973+GDC0941/Ctr; GDC0973/Ctr; IDH1mut-NHA/Ctr; RAS-NHA/CtrMol Cell Proteomics. 2017 Jan; 16(1):39-56.TiO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
27956182myometrialTMTOXT-CON/SP-REL; OXT-REL/SP-REL; SP-CON/OXT-RELBiochem Biophys Res Commun. 2017 Jan 22; 482(4):1393-1399.TiO2Orbitrap Fusion Tribrid (Thermo Scientific)
28060719bloodiTRAQADP 10s/Ctr; ADP 30s+Iloprost 30s/Ctr; ADP 30s+Iloprost 60s/Ctr; ADP 30s/Ctr; ADP 60s/CtrBlood. 2017 Jan 12; 129(2):e1-e12.TiO2Q-Exactive (Thermo Scientific)
28102081breast cancerTMTHER2+/HER2-J Proteome Res. 2017 Mar 3; 16(3):1121-1132.PY99; TiO2Q-Exactive HF; Orbitrap Fusion (Thermo Fisher Scientific)
28103766K-562label-freeK562-STI-R/K562Nat Commun. 2017 May 1; 26(9):656-677.TiO2Q-Exactive Plus (Thermo Fisher Scientific)
28122231JurkatSILACHIV-1 0min/Ctr; HIV-1 20min/Ctr; HIV-1 40min/Ctr; HIV-1 5min/CtrCell Rep. 2017 Jan 24; 18(4):1062-1074.Ti-IMACLTQ-Orbitrap Velos Pro (Thermo Scientific)
28165663HEK293TMTInsulin/Ctr; Rapamycin/Ctr; Torin1/CtrProteomics. 2017 Mar; 17(6).IMACQ-Exactive HF (ThermoFisher Scientific)
28176443A-431TMTK8-S431A/WT; K8-S431D/WT; K8-S73A/WT; K8-S73D/WTProteomics. 2017 Apr; 17(7).TiO2Orbitrap Fusion Tribrid (Thermo Electron, Bremen, Germany)
28179408HFFlabel-freeHSV-1 12h/Ctr; HSV-1 15h/Ctr; HSV-1 3h/Ctr; HSV-1 6h/Ctr; HSV-1 9h/CtrMol Cell Proteomics. 2017 Apr; 16(4 suppl 1):S92-s107.TiO2Orbitrap Fusion Tribrid (Thermo Scientific)
28188228COLO 205; HCT 116SILACPLX4032 0min/Ctr; PLX4032 10min/Ctr; PLX4032 15min/Ctr; PLX4032 20min/Ctr; PLX4032 25min/Ctr; PLX4032 30min/Ctr; PLX4032 35min/Ctr; PLX4032 40min/Ctr; PLX4032 45min/Ctr; PLX4032 50min/Ctr; PLX4032 55min/Ctr; PLX4032 5min/Ctr; PLX4032 60min/CtrMol Cell Proteomics. 2017 Apr; 16(4):663-679.TiO2Q-Exactive plus
28192239liverSILACHCC/NormalJ Proteomics. 2017 Mar 22; 157:40-51.TiO2LTQ-Orbitra XL (Thermo-Fisher Scientific Inc.)
28209619BT-474SIDLBT-474, Lapatinib/Ctr; BT-474-J4+Lapatinib/BT-474NPJ Syst Biol Appl. 2017 Apr 15; 77(8):1842-1853.IMACOrbitrap Q-Exactive Plus (Thermo Scientific, Bremen, Germany)
28210003Ba/F3SILACBirA-p190/BirA-p210Leukemia. 2017 Jul; 31(7):1513-1524.PY1000Orbitrap Fusion Lumos (Thermo Scientific)
28270605breast cancerlabel-freeHCC/NormalPLoS Comput Biol. 2017 Mar 21; 114(12):3175-3180.IMACLTQ-Orbitrap Velos Pro (Thermo Fisher Scientific)
28287266HeLalabel-freeForskolin/Ctr; H89/CtrJ Proteome Res. 2017 Apr 7; 16(4):1825-1830.IMACTripleTOF 5600(AB Sciex, Foster City, CA); Q-Exactive (Thermo Fisher Scientific)
28331001II-18; NCI-H1975; NCI-H3255; PC-9SILACEGF+TKI/Ctr; EGF, TKI/Ctr; EGF/CtrMol Cell Proteomics. 2017 May; 16(5):891-910.PY100; PY1000LTQ-Orbitrap XL ETD (Thermo Scientific); LTQ-Orbitrap Elite (Thermo Scientific, San Jose, CA)
28418008HT22SILACDexmedetomidine/Ctr; Dexmedetomidine/Propofol; Propofol/CtrSci Rep. 2017 Apr 18; 7:46455.IMACQ-Exactive Plus (Thermo Fisher Scientific)
28464451JurkatSILACCisplatin/CtrJ Proteome Res. 2018 Jan 5; 17(1):46-54.TiO2Q-Exactive (ThermoElectron, Bremen, Germany)
28539327NCI-H1299TMTTNFA 10min+SM 15min/Ctr; TNFA 10min/CtrMol Cell Proteomics. 2017 Jul; 16(7):1200-1216.TiO2Orbitrap Fusion (Thermo Scientific)
28606917Jurkat(HIV expressing)TMTDoxycycline 0h, Vpr-deleted/WT; Doxycycline 12h, Vpr-deleted/WT; Doxycycline 24h, Vpr-deleted/WT; Doxycycline 3h, Vpr-deleted/WT; Doxycycline 6h, Vpr-deleted/WTMol Cell Proteomics. 2017 Aug; 16(8):1447-1461.TiO2Orbitrap Fusion
28634120Jurkat E6.1label-freeCD3+CD4/CtrJ Proteomics. 2017 Aug 8; 165:69-74.TiO2Q-Exactive (Thermo Fisher Scientific, Waltham, MA)
28644030J.gamma1label-freeIgG 0min, Jgamma1/WT; IgG 10min, Jgamma1/WT ; IgG 1min, Jgamma1/WT; IgG 2min, Jgamma1/WT; IgG 3min, Jgamma1/WT; IgG 5min, Jgamma1/WTJ Proteome Res. 2017 Aug 4; 16(8):2729-2742.PY100Q-Exactive (Thermo Fisher Scientific, Waltham, MA)
28656000MDA-MB-231iTRAQPEKD3 siRNA/CtrInt J Biol Sci. 2017 May 16; 13(6):748-758.TiO2LCMS-IT-TOF (Shimadzu Biotech, Kyoto)
28674419HeLaTMTMitotic/Ctr; Pervanadate/CtrSci Rep. 2017 Jul 3; 7(1):4513.TiO2Q-Exactive (Thermo Scientific)
28731282HaCaTSILACHaCaT-arsenic exposed/HaCaTProteomics Clin Appl. 2017 Dec; 11(11-12).TiO2LTQ-Orbitrap Velos
28803361HFFlabel-freeN. caninum/Ctr; T. gondii/CtrParasitol Res. 2017 Oct; 116(10):2707-2719.TiO2LTQ-Orbitrap Velos
28816646NCI-H292SILACSmoke/CtrOmics. 2017 Aug; 21(8):474-487.TiO2LTQ-Orbitrap Velos (Thermo Electron, Bremen, Germany)
28842319A-204SILACDasR/A204; PazR/A204J Proteomics. 2018 Jan 6; 170:130-140.PY100; PY1000; IMAC; TIO2LTQ-Orbitrap Velos (Thermo Fisher Scientific)
28961369A-549; NCI-H358label-freeTRC-794/CtrProteomics. 2017 Nov; 17(22).TiO2LTQ-Orbitrap Velos (Thermo Scientific, CA)
28978645ARPE-19SILACPOS 120min/Ctr; POS 15min/Ctr; POS 30min/Ctr; POS 60min/Ctr; POS 90min/CtrJ Biol Chem. 2017 Dec 1; 292(48):19826-19839.Ti4+-IMACQ-Exactive (ThermoFisher Scientific)
29020638U2OSSILACHU, ATM+CHK1i/Ctr; HU, CHK1i/ATMi; HU, CHK1i/CtrCell Rep. 2017 Oct 10; 21(2):546-558.TiO2Q-Exactive (Thermo Fisher Scientific, Bremen, Germany)
29052541NB4SILACG2/G1; M/G1; S/G1Elife. 2017 Oct 20; 6. pii: e27574.Ti:IMACQ-Exactive (Thermo Fisher Scientific)
29154753hTERT-RPE1SILACCyclin A High/LowEMBO Mol Med. 2018 Apr; 10(4). pii: emmm.201707918.TiO2Q-Exactive Plus (Thermo Fisher Scientific)
29214152HeLaSILACCX-4945/CtrFront Cell Dev Biol. 2017 Nov 22; 5:97.TiO2Q-Exactive Plus (Thermo Fisher Scientific, Bremen, Germany)
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